Predicting synthetic lethal interactions using conserved patterns in protein interaction networks.

Benstead-Hume G., Chen X., Hopkins SR., Lane KA., Downs JA., Pearl FMG.

In response to a need for improved treatments, a number of promising novel targeted cancer therapies are being developed that exploit human synthetic lethal interactions. This is facilitating personalised medicine strategies in cancers where specific tumour suppressors have become inactivated. Mainly due to the constraints of the experimental procedures, relatively few human synthetic lethal interactions have been identified. Here we describe SLant (Synthetic Lethal analysis via Network topology), a computational systems approach to predicting human synthetic lethal interactions that works by identifying and exploiting conserved patterns in protein interaction network topology both within and across species. SLant out-performs previous attempts to classify human SSL interactions and experimental validation of the models predictions suggests it may provide useful guidance for future SSL screenings and ultimately aid targeted cancer therapy development.

DOI

10.1371/journal.pcbi.1006888

Type

Journal article

Publication Date

2019-04-01T00:00:00+00:00

Volume

15

Keywords

Algorithms, Animals, Artificial Intelligence, Computational Biology, Drug Discovery, Gene Ontology, Genes, Essential, Humans, Models, Biological, Molecular Targeted Therapy, Multigene Family, Neoplasms, Protein Interaction Mapping, Protein Interaction Maps, Synthetic Biology, Synthetic Lethal Mutations, Tumor Suppressor Proteins

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